Scaffold Ga0209979_1242929

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209979_1242929

Scaffold Ga0209979_1242929

Overview

Basic Information
Taxon OID	3300024353 Open in IMG/M
Scaffold ID	Ga0209979_1242929 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	606
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Denmark: Anholt
Coordinates	Lat. (^o)	56.62	Long. (^o)	11.67	Alt. (m)		Depth (m)	31
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042625	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209979_12429291	F042625	GGAGG	LTDSKAEKDSLWKDLKIQWSYLKRDSGADEVKKGSAKERINEIQEKLKLDKTDWNAPRSGPPGAHLTNAGAAASPSNNALVEKILGTILDMKRTMNEDFVSLNQKINNLDEKVTSCACNCAPPMETPND

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