Scaffold Ga0209979_1001401

Overview

Basic Information

• Taxon OID: 3300024353
• Scaffold ID: Ga0209979_1001401
• Source Dataset Name: Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26539
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (96.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Hadesarchaea → unclassified Hadesarchaea → Hadesarchaea archaeon B3_Hades (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Denmark: Anholt
• Coordinates
  • Lat. (^o): 56.62
  • Long. (^o): 11.67
  • Depth (m): 31

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075650	Metagenome	118	Y
F076658	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209979_100140127	F075650	GGA	VSLENWVKLPIGKVVCMRFREYRVTSRQITDPLFEVPRTVKSLVFLVDQVDGKPVDKTFSVVSEKLAQEFEPYLADGSYKDYTWCLVKDAAGFVPPRVARRTRA
Ga0209979_100140137	F076658	GGAG	MWYRYFLTVPRGTPWRTPVTKEIHLPEGVVTKVRVRFPPGPRGQVFTAIFEGTHKMWPRGEGNWAWGDDEPIEMGEHVRNIEGFHWILKGYEVNCRYDHTIWWDFNVLEREYAETWTPIQELVRLLKNVIGL
Ga0209979_100140153	F075650	GGAGG	VSLENWVKLPVGKVVCMHFREYRVTDRQITDPMFNVPRTVKSLVFLVDKVDGEPVDKTFSVVSEKLAQEFEPYLADGSYKDYTWCLVKDAAGFVPPRVAKRTRV