Scaffold Ga0209979_1000710

Overview

Basic Information

• Taxon OID: 3300024353
• Scaffold ID: Ga0209979_1000710
• Source Dataset Name: Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42252
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (93.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Denmark: Anholt
• Coordinates
  • Lat. (^o): 56.62
  • Long. (^o): 11.67
  • Depth (m): 31

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039194	Metagenome	164	Y
F046170	Metagenome / Metatranscriptome	151	Y
F071959	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209979_100071011	F071959	AGGAGG	MASRNYLVMSGDMSLMEKKEYRLNALAAGLERCGLKGIGDINADVPNLQPIPLANKKSRVQLIHDYIMTGQWPRSIDQRELAPLTDFGAAPLAAAQDSWLTVALAVGGVVSALNALAAYTLLVGKLMVCYGVSVESPIVPMPVSRLIFRRGGALGNIIAQFDMEQLGVRWEPDAFFSEAVVIDPQELFAIQVLGRAVVAAGARVHVHNFLFETSGLVVA
Ga0209979_100071012	F046170	AGGAGG	MIRIEDFGEIAYGGAVTLAEWWDNKRIADGKITSKDIFKKASFYTYLGVGLAATLISVFGWMKRWERWSEHVSHGFLYDLPRFAYNLSTSMGAASRGGAGSAAIQEAQRVIERARATKQLAEGRVTQRTYQPELEQAVAF
Ga0209979_10007109	F039194	AGGAGG	MPDLYIFKAQVGMFDPVALQNHSVGIHYQQKTYYRKVDFLEGIPPFQCIDITAGLGLAPVTPSGRVNIVNLEMADGEFGLWRWYPIDDAQIRLYHPAGIAKYQLRNLQVPVDMNILFRDPNLVSTEIAVWQNNRPAVEAINGHAFALGAVRLIAIGYRFHTVNLEGDGKNADPELVNAIKMGKAPCTDVWCSGRGIGD