Scaffold Ga0255167_1017807

Overview

Basic Information

• Taxon OID: 3300024350
• Scaffold ID: Ga0255167_1017807
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1396
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001229	Metagenome / Metatranscriptome	741	Y
F016967	Metagenome / Metatranscriptome	243	Y
F056605	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255167_10178071	F056605	N/A	IAESGYGIRIDRSSIVDNTVYVANGMIPPSIYDISGAFQTNVPYKVQGRFGWEKVPDAVELAAIELMKDYFAKDTVWRNKYIKNISTFDWDFEYTSEAYAGTGNAYADRLLADYVMVSKVEII
Ga0255167_10178072	F001229	AGGTGG	MFDLIDSVLSMQLDVYRQTEIQDADTGAIKREWNYHRTLDCHAKGVISNSATTRSSDKQVFSNKYMNDQIIQVRTSEKLTMREKVTNVRDAAGNVIWAESNFPTETPTVFEVIGTTPVTDPFGNVIAFNSSMKRSENQQIGQ
Ga0255167_10178073	F016967	GGA	MLVQAASGLERLMVGNRNNALLKDSTVAQISAYMYYNAQVISKLTTNKAFQSKFSSVIFAQIDKDFGEYIDALARTRPKSLHHVYEWKKVGNKTARLFKLNLLSQEGLSFKVGYQFTPSKSFVPASKYSRRRHVFANKAEIMENGTPLVISPKHAERLVFEVDGGTVFMPKGQSVKIKRPGGTAATNQFTLAHGKFF