Scaffold Ga0244776_10349076

Overview

Basic Information

• Taxon OID: 3300024348
• Scaffold ID: Ga0244776_10349076
• Source Dataset Name: 0.2um to 3um size fraction coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 996
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013820	Metagenome / Metatranscriptome	268	Y
F022754	Metagenome / Metatranscriptome	213	Y
F048916	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_103490761	F013820	N/A	IITFVDKMMPGHKTYAIMLIGIAMMVCQMMGYHQFDQEAWGVLGIGGAATWKMGQDRKKK
Ga0244776_103490762	F022754	N/A	VNELAIAILLVIPSPHKMVNWTVNQVPTQIQLIHKSGLEVSYNASPVSCSFRPRHNREMVFKSSENDCYAVYDLGSPTFIRHPDHWHPVEPPKSLKMNIGE
Ga0244776_103490764	F048916	AGG	MFLTGCSVLTELAAPVANFGLGLYNADTYYSKECAWYEQVKFSEDTKQWLLQNNPPEIVSKDLAHVARNNDIYKEVCDAK