NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244776_10328376

Scaffold Ga0244776_10328376


Overview

Basic Information
Taxon OID3300024348 Open in IMG/M
Scaffold IDGa0244776_10328376 Open in IMG/M
Source Dataset Name0.2um to 3um size fraction coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1036
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006112Metagenome / Metatranscriptome381Y
F006698Metagenome / Metatranscriptome366Y
F043926Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0244776_103283762F006698AGGAGMTRYYDELAVYERNGFDIIVDKSYEDLDPKDCFDDDCFNIKDMYRDIECGNLDWFMLRVRVMVENIELSSQYLGGCLYKDAREVLTDGTAEDLIDQAMVEAKRDVYRLYKKFQDISWELDAEGATA
Ga0244776_103283763F043926GGAGMVKWECQMFYKDRLYSGHYWTDELSLARARKKVVELQRYHPAMRFVLTDWQKGSIIDLHKHTKELA
Ga0244776_103283764F006112AGGAGMSYTLYIYKADRRTKTGERLYSTTVWPVKDDNAMRRTVAELFPLYRPEDGFRFDWTPSMKTVRNLMSGKDVQIAHDTPRSCDPSSELYWSM

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