Scaffold Ga0244776_10020766

Overview

Basic Information

• Taxon OID: 3300024348
• Scaffold ID: Ga0244776_10020766
• Source Dataset Name: 0.2um to 3um size fraction coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5417
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002778	Metagenome / Metatranscriptome	530	N
F003786	Metagenome / Metatranscriptome	468	N
F008078	Metagenome / Metatranscriptome	339	Y
F019647	Metagenome / Metatranscriptome	228	N
F035763	Metagenome / Metatranscriptome	171	N
F038230	Metagenome	166	N
F045094	Metagenome / Metatranscriptome	153	N
F090393	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_100207661	F035763	N/A	SDPKEKGCEQKEKVKEREPSETYLCFTAFASTYERLAGVTYPSDKNNYIMTAKDGANCKKLITWLKKVSASEQATDEMVTMFTTAAWQISDKWLKANFTISNIYSQANNIYTKFMYSNPAAQEKRRQEEIERLVNEFEG
Ga0244776_1002076610	F090393	N/A	MALDRKTSFNVVFYDHEEEKIQPWGFTGSSRLALLVHTIAFQKDKIEANNINKEEIIKSALDYLIHDLKKFLETPYTTEDNA
Ga0244776_1002076612	F002778	N/A	VKEYNTQMMEIKAFCDEVNAWISTAPSAEHLEECDEYLRQLSAYYSRYTVISGMNESIYSQLLMMCIRDMAEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVKQLLLTTSELYRTLLSSFRQERILVGHMTT
Ga0244776_100207664	F008078	N/A	MKQTPKEKAKELFNYYYILIQDIGGELGQEILVSILAKHCALFAAREVLKEKWNYEIEGSYDEYFYWEEVEHEIENYE
Ga0244776_100207665	F038230	N/A	MNNKQDRNAYMREYMKKYRANMNEYTYKMIRERENHRLRAKYHAMTDEERQKYIEYQRTYHKLKQFINE
Ga0244776_100207666	F003786	N/A	MSNLTKYQPRNSDEQAIITARSNRIANMEQKDAYKQTLNVISSVFPMYGIDGDLAFYANIAKEIVKTFGQIAANEIEIAFRLFSAESLELDEDVKFYGKANMHTIGKILNGYMTYRRKVIASHDNEVAALRHQVQMEERGRLEKEKLYAEFPTMIKEFTGKTFEDVPLYWYDMCLKFDMITYEEGEKRALWDEAQAIALKEPPESLDLMTIRSHAKKIEQGNMKRAVVIAQKLAVWRKVIKK
Ga0244776_100207668	F045094	N/A	MNDISKRFASYLMDDYKIKGTTKEDVDKAINKIFRYELLDDAQQVLFNEIMTEALDVPWIAEQLTDVWDRYEQEILDCKKEDYENR
Ga0244776_100207669	F019647	AGGA	MKIVKGIVKYGTGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQNIQLIDDKGKYKVVEDEPQTPAAQTEQSEKPDLAALVFEMSAIYSQAYIDIYNKISEAGVPHENATAATSTIFIQVFQKLR