Scaffold Ga0244776

Basic Information
Taxon OID	3300024348 Open in IMG/M
Scaffold ID	Ga0244776_10002760 Open in IMG/M
Source Dataset Name	0.2um to 3um size fraction coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024348 Open in IMG/M

Scaffold ID

Ga0244776_10002760 Open in IMG/M

Source Dataset Name

0.2um to 3um size fraction coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17477
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (4.76%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

17477

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (4.76%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021773	Metagenome / Metatranscriptome	217	Y
F044501	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_1000276013	F044501	N/A	MKVIKSYNKFKESLVIDLMMSSVDILESMNIWHDVLLSAISAEQKDMFDTLKLPKDFYQGRLTLDFLSDNIEFVNSLSSLGLKKSPVQNTEEYQTFVNKPCKWMFIYGIESNELENPIYITFQTWNETLKQWDDVKLFKINDDIKKFYDKLASKTIEVADGDENFIYVTSNGNDWELQNLDKENDTYKRFFRKEELQSLLNNKNVKVSII
Ga0244776_1000276014	F021773	N/A	MKWLRDYKLFKEARQEKVSYKNLVSEICTAMVLLNNEFLDNILDRGLKARYSENSEIFITDLKNLLLAKNRLNLGRFEGDTCVADGEISKANSVFETIEFDIEKDWDKLVSARTTARNIIDKLLPDNKLDSDEIKNIFWIGPNKDSDHQEDIVVELKDGKQFSFYLNKNLATQKTASFSLFADDLIGADIDRLYKEDYLPKWDKLTQEWIRLIYENANKNIQQHIEKFIDAKRIDTIGYFEYFDIRHKDLKFKHLGEFIQEFDKNILKFSDLLSEIWKNKDNCFMDTERVVKEWMETKIVILNSKILENLLTSSLKSNHADDIKKVEGDWKLAGGTVKMKLFKTLVEKMGCLERPVYFLGKSGDVFNMAPSREFFREHYDNLNIKFDYHVNFEVNEEEEMNDFLIRIKLELDDNTLVDMQVIVKFASSEMSGKLSAKYKFDISDNFNYLISKKQYGN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244776_10002760

Overview

Ecosystem & Geography

Associated Families

Sequences