Scaffold Ga0244775_11238169

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0244775_11238169

Scaffold Ga0244775_11238169

Overview

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_11238169 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	580
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003080	Metagenome / Metatranscriptome	508	Y
F073563	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_112381691	F003080	AGGAG	MTTAKDLTNHLIYRAKNLKEFVVEREWESIPTGIVRFNIQHTQGHLARLFVPALTQSEAEEMVDEWFEEDVE
Ga0244775_112381692	F073563	GAGG	MNPKYLYTIKWTQPYATYQMRPYLRHLRNEYETQLEAKLDRGEFDDAKTVIQRIMSL

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