Scaffold Ga0244775_10285673

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10285673
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1370
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F007691	Metagenome / Metatranscriptome	346	Y
F038241	Metagenome / Metatranscriptome	166	Y
F105171	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_102856731	F105171	N/A	NVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKSCLTDKTEDISSYIRTFGSRLDSNCSLWQSKMSVRNDMLVV
Ga0244775_102856732	F007691	N/A	MNTINELINEIYEDNYSHLEFEENMGGIDCDCNIHMVLNTIATYAGIEVG
Ga0244775_102856733	F038241	GAGG	MLGYTKEDLDQMSNSVHDAKLFYILNSDVIKVDEDPIVDGLLKANDFLQGLWAEGYFDHA
Ga0244775_102856735	F000263	AGGA	MEPLRTELQPHLQRMVNAGVSGLDIMHGELKNLMLIAEQELAEAQAREDETEEAMDSMDRTRCEGVVDTLVDLYNLTYQLSFAIGDKNA