NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10285673

Scaffold Ga0244775_10285673


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10285673 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1370
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F007691Metagenome / Metatranscriptome346Y
F038241Metagenome / Metatranscriptome166Y
F105171Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_102856731F105171N/ANVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKSCLTDKTEDISSYIRTFGSRLDSNCSLWQSKMSVRNDMLVV
Ga0244775_102856732F007691N/AMNTINELINEIYEDNYSHLEFEENMGGIDCDCNIHMVLNTIATYAGIEVG
Ga0244775_102856733F038241GAGGMLGYTKEDLDQMSNSVHDAKLFYILNSDVIKVDEDPIVDGLLKANDFLQGLWAEGYFDHA
Ga0244775_102856735F000263AGGAMEPLRTELQPHLQRMVNAGVSGLDIMHGELKNLMLIAEQELAEAQAREDETEEAMDSMDRTRCEGVVDTLVDLYNLTYQLSFAIGDKNA

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