NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10205167

Scaffold Ga0244775_10205167


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10205167 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1653
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006220Metagenome378Y
F007310Metagenome353Y
F013084Metagenome274Y
F018927Metagenome232Y
F043399Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_102051672F043399N/AMFINDFPIVIWTIVKKNNNYILLDSCGIEVFRRKENRKKEIYQYCEDNGIDIQEEF
Ga0244775_102051673F018927AGGMNKHIEITRHLTVDGTSTYYVVEKTKNSSSIIWNGTCKQAAYQVAYRNARKQGTPLYDTLYKAELDRNGVKHIIPIGNELLEVNN
Ga0244775_102051674F013084N/AMGILSIIVLMEETKKVVLSRGHNVKNWLVLGNDCYALECSDCKMSCMIKEKPLPNEIKAGGEALAVNCVKPVKEKKLRKK
Ga0244775_102051675F007310N/AMRTVLWNNTEQWLNYHHYELLIEDITGFTLKESLCAESVKYMAKRLRDTSYHRAFRVKYTIFEDEYKTLVETFNKQADNNGKIGIK
Ga0244775_102051676F006220AGGAMKQKKYNEELNLASGTEMMRASQMRPTSFKDKSKYSRKAKHKNRQENNSGDSF

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