Scaffold Ga0244775_10205167

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10205167
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1653
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y
F013084	Metagenome	274	Y
F018927	Metagenome	232	Y
F043399	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_102051672	F043399	N/A	MFINDFPIVIWTIVKKNNNYILLDSCGIEVFRRKENRKKEIYQYCEDNGIDIQEEF
Ga0244775_102051673	F018927	AGG	MNKHIEITRHLTVDGTSTYYVVEKTKNSSSIIWNGTCKQAAYQVAYRNARKQGTPLYDTLYKAELDRNGVKHIIPIGNELLEVNN
Ga0244775_102051674	F013084	N/A	MGILSIIVLMEETKKVVLSRGHNVKNWLVLGNDCYALECSDCKMSCMIKEKPLPNEIKAGGEALAVNCVKPVKEKKLRKK
Ga0244775_102051675	F007310	N/A	MRTVLWNNTEQWLNYHHYELLIEDITGFTLKESLCAESVKYMAKRLRDTSYHRAFRVKYTIFEDEYKTLVETFNKQADNNGKIGIK
Ga0244775_102051676	F006220	AGGA	MKQKKYNEELNLASGTEMMRASQMRPTSFKDKSKYSRKAKHKNRQENNSGDSF