Basic Information | |
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Taxon OID | 3300024346 Open in IMG/M |
Scaffold ID | Ga0244775_10205167 Open in IMG/M |
Source Dataset Name | Whole water sample coassembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1653 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006220 | Metagenome | 378 | Y |
F007310 | Metagenome | 353 | Y |
F013084 | Metagenome | 274 | Y |
F018927 | Metagenome | 232 | Y |
F043399 | Metagenome | 156 | N |
Protein ID | Family | RBS | Sequence |
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Ga0244775_102051672 | F043399 | N/A | MFINDFPIVIWTIVKKNNNYILLDSCGIEVFRRKENRKKEIYQYCEDNGIDIQEEF |
Ga0244775_102051673 | F018927 | AGG | MNKHIEITRHLTVDGTSTYYVVEKTKNSSSIIWNGTCKQAAYQVAYRNARKQGTPLYDTLYKAELDRNGVKHIIPIGNELLEVNN |
Ga0244775_102051674 | F013084 | N/A | MGILSIIVLMEETKKVVLSRGHNVKNWLVLGNDCYALECSDCKMSCMIKEKPLPNEIKAGGEALAVNCVKPVKEKKLRKK |
Ga0244775_102051675 | F007310 | N/A | MRTVLWNNTEQWLNYHHYELLIEDITGFTLKESLCAESVKYMAKRLRDTSYHRAFRVKYTIFEDEYKTLVETFNKQADNNGKIGIK |
Ga0244775_102051676 | F006220 | AGGA | MKQKKYNEELNLASGTEMMRASQMRPTSFKDKSKYSRKAKHKNRQENNSGDSF |
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