NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10164481

Scaffold Ga0244775_10164481


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10164481 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1869
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014380Metagenome / Metatranscriptome263Y
F093878Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_101644813F014380N/AMAIVNQVDKRVRMTTWQIVKYQILTHCYLQGIQVSEADLECLTYLAVEGEQELTSFCIKAHAKTIFSSTQSVRNCLTKAEKKKLIVKEGKNKKKIFINPIMNVHSKGNVLLDFKFLSVAS
Ga0244775_101644815F093878N/AMSEEQKIPTKEELIAFFAEQVEVKRAQLELQKISTELAVAKAEEMKALAFIAQMTTQQSASQPQPEGTPHTITQEDLDNNPELLEAGLAVGDDIIIPTAAQFAEGVPAKKLKKK
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