Scaffold Ga0244775_10101074

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10101074
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2452
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024558	Metagenome / Metatranscriptome	205	Y
F039639	Metagenome / Metatranscriptome	163	Y
F061859	Metagenome / Metatranscriptome	131	Y
F081346	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_101010741	F081346	GGAG	MMSSLLQQIKAAKLDPNKPITHINPPTTVPTRVMPHKPGHDDQVVVPETEANPDKPAKPRKPRK
Ga0244775_101010742	F061859	GGA	MTVEILLIIIAVCLFACYLVYKWQESVVDMAVPPYQEPVKPDMVEQWKAATKADTLDNIDAWNMKIGDKIWYKPDSGALTPAQLEQIKDSVEPTAINPQAAWPFPTGRQP
Ga0244775_101010744	F039639	GAG	MNTDREFIKWFYEDAYPEQGSNRRQVYSTTQNSQNINVIDYWMREAFKAGAEAATHGYEVNALEQFEAFNINRNYPL
Ga0244775_101010746	F024558	N/A	KEKTMIVVLYTEDFEPIIPIDLPLWLLDRLEQEGAVRVAVSKPMGFKGEKIPVGTVGNEDMPTVRIRYEKLRWHDGTLKTLLVTPDEELALTLTPEWLPGQRAPIQLYLNTVRKMHEELIKQIRKNQS