Scaffold Ga0244775_10083275

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10083275
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2731
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F005633	Metagenome / Metatranscriptome	394	Y
F008690	Metagenome / Metatranscriptome	329	N
F037116	Metagenome / Metatranscriptome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100832751	F008690	N/A	ALMVSGNYGAATVIGTAANFDTSDLPAILALAKNYRSKNLILDGGHIARLQFSAASNTFPDSRLESLANGRFGFDVIAENNRWTSAETNTVGFVCGPDAIAIASGLPVGMIAGEFLEQRAVTTANGLSCLLSVWYSRASRSHMASYDIMFGAAAADTTQAEVLVTA
Ga0244775_100832752	F005633	AGG	MRIATTIAVDKAGKSKIVAGPEVDAAAQRTDFNTAKIAEGSKLILWIQGSVAPKIRKG
Ga0244775_100832757	F002843	N/A	MIVPVNIVAVQVNQNNSLFVTTGIDYDSDGAVVGSEITSQYTLNPGDSLEGQPVEVVNIANALWTSAVVAAYKAANPVVEAVQPTE
Ga0244775_100832758	F037116	N/A	MEPTNNGTNSPGLSLAAAAGATAVSFLPILTDWVRLITALIGLACAMYGAYRLFRSK