Scaffold Ga0244775_10073761

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10073761
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2922
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006220	Metagenome	378	Y
F008494	Metagenome / Metatranscriptome	332	N
F013084	Metagenome	274	Y
F092024	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100737611	F092024	AGGAG	MRTNRNSDRLREILVSTRHQIVSLKDIQMDMLRTDS
Ga0244775_100737613	F006220	GGTGG	MKKFKKFVEELAIASGTEMMRASQMRPTSFKDKSKYSRKAKHKNRQDKNSGDSYLQSL
Ga0244775_100737615	F013084	N/A	MGILSILGLMEETKNIVLSRGHNVKNWQVLGNECYALECADCKKTVMIKEHPLPNEIKVGGEAVAVNCVKPVKEKKLRKK
Ga0244775_100737619	F008494	AGAAG	MFMNAVGQYTSAIDKTAESNITYKKSVYALEDAVNLIYREVDPKELGSNAEARNAKVSEKTQNLIVAKREAEYTLETARANESRIKAEVDQIKYIIRALEVKEEA