Scaffold Ga0244775_10057875

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10057875
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3355
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003299	Metagenome / Metatranscriptome	495	N
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y
F071222	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100578751	F071222	N/A	MDKEQILKIIFTEEASLLDQAVELRDAFGNEDPATQRAYSQWVVISNLIDRINEETN
Ga0244775_100578753	F004234	GAG	MNFINLFKRDNTYFSNWTTDYDSDVYIAGTIEPFTYNASENDEGYLSLFPLSEANLNLLKSKL
Ga0244775_100578754	F003327	N/A	MTEFTQLAIEVQDAIANGEYTHQKYLRFREWYFQNYEGSKRNANRDFRMFDLMYGLDVPIKNNDNEDI
Ga0244775_100578755	F003299	N/A	MKTYKVVFKTFDYWGGPVKLVTRIIEAYDADHVKQLIQKNDDLILLIEEV