Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10052166 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10052166 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3557
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (16.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3557

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (16.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006547	Metagenome / Metatranscriptome	370	Y
F006935	Metagenome	361	Y
F017132	Metagenome	242	Y
F022884	Metagenome / Metatranscriptome	212	Y
F040624	Metagenome	161	N
F047676	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1005216611	F017132	N/A	MIRKMETAKVGEDLYEIIKKLPIQRFTQEVTGEYAETLKKYYGVEKILKFHQTQEYLFVNLIEELQIQTNDNKETSESN
Ga0244775_100521662	F022884	N/A	MLTINNLDKIVRYQIDIFRVKSMVCGHSNYHICLIDSPFGGQVRDLKLNRMKGRRGKYTLSHGNHFLYLKFSDIQNLDTFCKQIGKLLC
Ga0244775_100521665	F006547	AGGA	MKWLLILLLLPFSISAQVYDTTYQMVYYQKSLIKKGKIELYVYSSYDIGWADESGMGITLTIPNKRKKKKHKY
Ga0244775_100521666	F047676	N/A	MELIITLIVLIIVWCVAFMVGNKQGVNRTINQIKKDGGYFDMEITGAVYPILYPTSSVNNDTMGTVRELNQMEHKAEEEKGDIDFMRNWIQEKSGKKDPVSQKRKPKSIKDWEDEFDIGGNS
Ga0244775_100521667	F040624	N/A	MKSEKVMALYKRKKELQEQIMYWQKFQGVNWLGKWGRSVRLELLKEKFERIEKQISKLKN
Ga0244775_100521669	F006935	N/A	MDKRYAKQIIQWAEEAKEILTVRKEIIMDDDVTDEQLGTIIRMMYRAKVEIQNETIKRTKQNLEL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10052166

Overview

Ecosystem & Geography

Associated Families

Sequences