Scaffold Ga0244775_10050336

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10050336
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3629
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001460	Metagenome / Metatranscriptome	690	Y
F009685	Metagenome / Metatranscriptome	314	Y
F022414	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100503363	F022414	AGGCGG	MSKSPEIKVAEQLTNLMDDHWFNATIFGRYLAEQPVYTIDRVMEMVVSVISEQAKMYQLLKVNGTSSEGLLLANELNECIKAYQEVTVISNLKLPKPTTYNVKREEPVRQVQFGWREDKDPFQ
Ga0244775_100503365	F009685	AGGA	MKMSDQYVDSVLAEAQKLLWGGSETENIAAHNLISKLIKDRLEVISN
Ga0244775_100503367	F000263	AGG	MEYTPDYNVPAHLQRMVDAGVSGLDIMHGELKNLMLIAEQQLAEAQEVEDLSEEAMDSMERTRCEGALDTLVELYKLTYQLSFAIGARNEA
Ga0244775_100503369	F001460	GGA	MLGYTESDLNKMINAVHDAKLFYLRYPSDLMDKTELRNDLEMAVSFMQGLWAEGYFDHA