Scaffold Ga0244775_10037572

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10037572
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4275
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → unclassified Acinetobacter → Acinetobacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010161	Metagenome	307	N
F016812	Metagenome	244	Y
F034183	Metagenome	175	Y
F043402	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100375723	F010161	AGGGGG	MTRKNKMLYDALIDYVSYFYNCSDMPDSAKMNALKIFEALLDEKIDVNDFIPVMRQMQFSLDMVTA
Ga0244775_100375726	F043402	GAG	MTEKFKELVEKLDEKESLNLVTILSSLLESWEDGKINLYSEIHNFELTTIYKVLNLFKNDRQAEESSIES
Ga0244775_100375727	F034183	N/A	MTDKLKNLASNLNDEEAALIFQLLLSAFESANYQKVQYTNEDLPDEASLMINVELDTKNVPADVIEKLLGFLK
Ga0244775_100375728	F016812	AGGA	MNTLYPELIEEEDEATFSNNLFKLYKIDERCGKFEAPSFRVLYLKDKDIQVHVSNHFNSPSCIITYYNIKDKSCIDARTISKRLYNKIASHYFEVKKTSY