Scaffold Ga0244775_10030057

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10030057
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4842
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y
F009750	Metagenome	313	Y
F010398	Metagenome	304	Y
F070110	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100300571	F010398	AGGAG	MEISIEGSVEVNYHLVIDEDVFNECCEEAGLDPANFKKFTKAQWDELNPHLIQAVVDNVADIDYTEIHCESTVYADTLTIDDSDKMTTVYYEEDRKTGSVEIL
Ga0244775_1003005713	F009750	N/A	MKEIITNIHKNGSFYNNKIIRPHLTDRLGLRLDFPEGAKCILWTDGKRYYAICEAFGEYFTLNIPQKIGDDIWLKFKTQFEGNYSYEDI
Ga0244775_100300572	F070110	N/A	MFSLDMPIVIWFIKKKKDYYVLLDSCGQIVMRRDEKRKNEIYKYCEDNGIDLQEEF
Ga0244775_100300573	F006220	AGGA	MKHKKYNEELNLASGTEMMRASRQRPLVFKDKTKYTRKDKHKNRQDKSSGDSLFLG
Ga0244775_100300574	F007310	N/A	MRQVYWNSTERWNNHHHYETLIEDLTGFNLQKDLCAVTVKYMAKRLKDTPYQRRFKSLYTIYENEYNVLVDKFNSVAENNGMIGIK