Scaffold Ga0244775_10025732

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10025732
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5280
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006935	Metagenome	361	Y
F017132	Metagenome	242	Y
F062761	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1002573212	F006935	N/A	MNKSYAKQIIGWAEEAKEYLTIRKEIIMDENVTDAELGMIIRMMYRAKVETQNETILKTKENAGL
Ga0244775_100257322	F062761	N/A	MGFNHCYLTSVLDLQRNLDNVGLEKFIKTYRSYDALTGPSECFEFLESKINLYENIKNNDINFINGLN
Ga0244775_100257329	F017132	N/A	MIRKMETAKVGEDLYEIVKRLPIQKFTQEVTGEYADTLKRYYGVEKILKFHQTQEYLFVNLIEELQIITNDNKETSESN