Scaffold Ga0244775_10022413

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10022413
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5720
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012344	Metagenome / Metatranscriptome	281	Y
F018175	Metagenome	236	Y
F020355	Metagenome / Metatranscriptome	224	N
F060919	Metagenome / Metatranscriptome	132	N
F090404	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100224131	F020355	N/A	YKVITVERKLTGEQVFLDNFRNFQPIVQLPTKQDIFNFRFGPNNQYKNEAHLLMKWFENDKWNFFLDDLDTNHSTVFLMGSHFMDTIYDGASLPRPGWAHLSNGVMLMSPKKTANIAGDKVLHVTFEVDPHFSGRRWCDVLLLPAGETVYSGKAADKIEMNTKSGKLFRWAIGAGHHNINIDTGYNADGSRKSYSVPVKFADRHSIYSYPAPYRNINNLTEYKVGTFVANSVVQNGNDVNVKLSSKFFDSNKFPAFNLESNYSPKSGWIRFAEFGGAAEYEWTPQTFKMIDDIDFNPNNWWIKETSKVSLNKLMDAYSSNRSGAIIYRSTMNAVSGKYEGEIFFRPSVDRRDFPLNRTWQGLDRRVQFDLYVSKNRVVVVEDGYLVADSPLPVDFPFEEINVNYTHLIYHTYNEIGEQRTWNPDNAYWINFRPFADERHWDNMGFEVLTGFPNVKLF
Ga0244775_1002241311	F012344	GGAG	MKFADVLDALMEGKPITRAAWEQKYLYYDKDDNVFVYHYSEDEDRELMCWGLDLEPRDLIADDWDIDYWDTDHIVDDNKKVDEE
Ga0244775_1002241312	F090404	GGAGG	MKFADVIASLMAGKRVRKTNWESKTAFFLYDKEDNTFDFYEVLDGEECRTQYYSTLDLTPKDLMSDFWEILE
Ga0244775_100224135	F018175	GGAG	VEKSPKNQKEYYHNKVREFEKRTGINMNVKNVSKFYDLNIEDVEYNTLAAKDMLFKHGCYIYHDLLVEEDPRSNGTNWLKYGFAFLNGKTYKYYYEIKHLGQEIIKIDLEHYSSKTWKAAKVPNTYFAHIFENKHIGSNFDDFAKENNIELKRDMNWAIKMIESGKMVSREGNPNLTLFPKKYDHAESTITTTDLFAEDWVIVPNKLFKDVLDDLNAGKTIRRKSWHSDWGVGKYARYGKIIYLDLIADDWEVVDVVAEVNKQQEQILKDRNEH
Ga0244775_100224139	F060919	N/A	MTGREALDKLQAGYILRREAWEPDEKCKAYFSDDLWSIRVECDSISPAPEYVPDDSKFADYMSIFDAIDAGEFLMDDWEIVE