NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10021386

Scaffold Ga0244775_10021386


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10021386 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5886
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019829Metagenome227Y
F061848Metagenome131N
F063688Metagenome129N
F067738Metagenome125N
F082693Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1002138613F063688N/AMETMSRYNSNYGSHDQLQDLRKLNMELHHELDAIKRLLDETTKALHQSQDELLLAIEALVRARDIKP
Ga0244775_100213864F067738N/AMQGLWVALVAGGFTVLVAIINRADKTSRKEHAETYKALGRIEQKIDGHVTNHEKF
Ga0244775_100213867F061848AGGMNFLLAKIFTAVTISMAGVAFAYDAYNAPSALPVTPPVTVSLAPRAPSTTTTAAPLTDCQYALQLASQAGWPLTEMGTVARIIYRESGCKANAFNAKDSNGGSYGYYQINGYWCRPNKYWPTGWLQAQGILQTCNDLFDPVVNTNSAIAIWHNSGYGPWALPNP
Ga0244775_100213868F019829N/AMTEYPIPDPGLTESTRQMYTEKYRETFNNFIDEICRPNHVPPVKDIDHSILLDELAILREKYLNGTPSDEHKFAAAVITAAMAIIIGI
Ga0244775_100213869F082693AGGMAQIDERVTIRLNSQDRAEINYLYQELETQTKHLQARNTFTHSYTPKASFTGLVAEYAFAKWFGYDYVIKPYDPTNDDVLGYQIKATERYDGCLIKQPHNPSGIYILGIVLNDYTEVSYRGWKDSSEIQRACYWRADVPKPGYFVPQVALWPLSDLPETSELQTHRTTGLW
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