Scaffold Ga0244775_10015052

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10015052
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7195
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002406	Metagenome	562	Y
F006182	Metagenome	379	Y
F043402	Metagenome	156	Y
F093841	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1001505212	F002406	GGA	MSDRLRDELSSEYDDETKDLIIRAFMNGLFQNPAIVNELKSSSLIESDYFEDED
Ga0244775_1001505213	F093841	N/A	MKIEKFIYMSGGFYVYKMEDGYAVKDQFGYTLKAAKTVKTCDRYVQQQLETRRAAERYAIEKINQDHIKNRSV
Ga0244775_100150525	F043402	GAG	MIDKFKELVENLDEKESSNLIIILSLLLETWEDDKINLYSEIQDFELTTIYKVLNLFNEQTKDAS
Ga0244775_100150529	F006182	GAGG	MKIDFKVSGVMEIPDDAIKHYDVAGKLYALEFNDIMYMLQVCIVAEQGAGGFDILHQFEDMENHNIKNLRYDDAEFFED