Scaffold Ga0244775_10014238

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10014238
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7426
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002092	Metagenome / Metatranscriptome	594	Y
F005090	Metagenome / Metatranscriptome	412	N
F009073	Metagenome / Metatranscriptome	323	Y
F024315	Metagenome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100142384	F024315	N/A	MNYSQLSNLSVAELRNINQIVIELIKQKRTIESLQKKVGLRIGMTVRVNHPKLQGRDLEVVKINRTKANLRVVGGYSSYNVPVSLIEY
Ga0244775_100142385	F009073	N/A	MKNYQIILTAIGSFLVGVSILNGTAQQYVHFAGPENELGCATIALTMGVLSTYAIDWKGFLNYLNK
Ga0244775_100142387	F005090	N/A	MKKKMKFTWCGVNFELPTECLRTTDYWNKPLENPYIYIGRKECPAIAKQFVKKKYPQLLVWGSSDTFANGNSASVYVCNADGTPLDRASKEWKDIYGFVDQMSGGRYNGMEDIYEYGDSGATDNGTKLDFGTKYLHINNEAPFGSWPSVLSHIKGLMNGEYVFGVQTKEQSIERVKKYATASNIDKALRYI
Ga0244775_100142388	F002092	N/A	MRTTNQKALDYLNSNPIVANFINKVNIQRKDYYVKADMPSQYKELTVEVGNKFIRLWQGTGCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGTARYGVYGPEYL