NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10013945

Scaffold Ga0244775_10013945


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10013945 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7516
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Associated Families11

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000714Metagenome / Metatranscriptome924Y
F000868Metagenome / Metatranscriptome853Y
F001019Metagenome / Metatranscriptome804Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F009685Metagenome / Metatranscriptome314Y
F017829Metagenome / Metatranscriptome238Y
F022414Metagenome / Metatranscriptome214Y
F038241Metagenome / Metatranscriptome166Y
F047059Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1001394510F000868AGGCGGMSFLENENQMVIDAIYSDIGEALVEDWVNSNLDEGQLFADFRFAEMSGDNYIKGRFNLFYDMKPGDQYYIEWNEEL
Ga0244775_1001394512F001125GGCGGMGDRANFGFKDSKGDTLYLYGHWAGHRMLQNLADAVSAAEPRWGDHSYATRICISQLINEEWSSETGWGLYINQLGDNEHKVPVINWAAKTFTLFEEDLSTEVFSTSLEAFVKKYSSQPSMV
Ga0244775_1001394514F001043AGGAGMSDYKDGFEDGYKFAREEMMEKLAEIDIADIDTWILDRLCEMIEGGKL
Ga0244775_1001394516F000714GAGGMEETTTQAVTVPDTYNSNLLVTYKVIRGYSDAEYATDKVASIEWDLHNGRQSQKTVGVLNSKIDTVKDIIGEAYADSDDQETLRAIAEALGIDLTREVEWSATIEVSGTITLDLLADSDTDVEQEIYDNLYVDSQNGQIEIVDTEVTNVREN
Ga0244775_1001394518F017829AGGMANRYRVEIYDANKLNDVTIYSEQGVDKEYLTELVFSNLNKFSGKINAYVFDNVKKKKTTAMFLDESIVNFNKQMLSKASRIEFGS
Ga0244775_100139452F022414AGGCGGMKTPEIKVAEQLTNLMDDHWFNPTMFGRYLAEQPLYTIDRVMEMVVSIISEQAKTYVLHRTKGETTEGLLLANELNECIKAYQEHTVISNLKLPKPTTYNIKRDVKVNPRIFGYTDEDKNPFDQV
Ga0244775_100139454F009685AGGAGGMKMSDQYIDEVLNRAQKLLWGGSETENIEAHNLISKLIKDRVEQVSI
Ga0244775_100139456F001019AGGAMSYEPSLEILEMEYSCSPGGVDLFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEA
Ga0244775_100139457F000263GAGGMNAEDIGLPPHLQRMVNADVPGIDIMHGELKNLMLIAEQDLKDALEQEERSEEAMDSMVRTECEGRLDTLVELYKLTYDLSFAIGVREENKKDGHL
Ga0244775_100139458F047059GAGGLTKSSAFIEYIKLHKLSLEQDLEDARNNIPLDEDEYFESDAFYMGAIDATEHLLSVAIGIMNDNERIY
Ga0244775_100139459F038241GAGGMLGYTKDDIDQMSNSIHDAKLFYIMKSDVEQVDKDPLVEGLLKANDFLQGLWAEGYFD

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