Basic Information | |
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Taxon OID | 3300024346 Open in IMG/M |
Scaffold ID | Ga0244775_10013945 Open in IMG/M |
Source Dataset Name | Whole water sample coassembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7516 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (89.47%) |
Novel Protein Genes | 11 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 11 (100.00%) |
Associated Families | 11 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000263 | Metagenome / Metatranscriptome | 1424 | Y |
F000714 | Metagenome / Metatranscriptome | 924 | Y |
F000868 | Metagenome / Metatranscriptome | 853 | Y |
F001019 | Metagenome / Metatranscriptome | 804 | Y |
F001043 | Metagenome / Metatranscriptome | 794 | Y |
F001125 | Metagenome / Metatranscriptome | 769 | Y |
F009685 | Metagenome / Metatranscriptome | 314 | Y |
F017829 | Metagenome / Metatranscriptome | 238 | Y |
F022414 | Metagenome / Metatranscriptome | 214 | Y |
F038241 | Metagenome / Metatranscriptome | 166 | Y |
F047059 | Metagenome / Metatranscriptome | 150 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0244775_1001394510 | F000868 | AGGCGG | MSFLENENQMVIDAIYSDIGEALVEDWVNSNLDEGQLFADFRFAEMSGDNYIKGRFNLFYDMKPGDQYYIEWNEEL |
Ga0244775_1001394512 | F001125 | GGCGG | MGDRANFGFKDSKGDTLYLYGHWAGHRMLQNLADAVSAAEPRWGDHSYATRICISQLINEEWSSETGWGLYINQLGDNEHKVPVINWAAKTFTLFEEDLSTEVFSTSLEAFVKKYSSQPSMV |
Ga0244775_1001394514 | F001043 | AGGAG | MSDYKDGFEDGYKFAREEMMEKLAEIDIADIDTWILDRLCEMIEGGKL |
Ga0244775_1001394516 | F000714 | GAGG | MEETTTQAVTVPDTYNSNLLVTYKVIRGYSDAEYATDKVASIEWDLHNGRQSQKTVGVLNSKIDTVKDIIGEAYADSDDQETLRAIAEALGIDLTREVEWSATIEVSGTITLDLLADSDTDVEQEIYDNLYVDSQNGQIEIVDTEVTNVREN |
Ga0244775_1001394518 | F017829 | AGG | MANRYRVEIYDANKLNDVTIYSEQGVDKEYLTELVFSNLNKFSGKINAYVFDNVKKKKTTAMFLDESIVNFNKQMLSKASRIEFGS |
Ga0244775_100139452 | F022414 | AGGCGG | MKTPEIKVAEQLTNLMDDHWFNPTMFGRYLAEQPLYTIDRVMEMVVSIISEQAKTYVLHRTKGETTEGLLLANELNECIKAYQEHTVISNLKLPKPTTYNIKRDVKVNPRIFGYTDEDKNPFDQV |
Ga0244775_100139454 | F009685 | AGGAGG | MKMSDQYIDEVLNRAQKLLWGGSETENIEAHNLISKLIKDRVEQVSI |
Ga0244775_100139456 | F001019 | AGGA | MSYEPSLEILEMEYSCSPGGVDLFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEA |
Ga0244775_100139457 | F000263 | GAGG | MNAEDIGLPPHLQRMVNADVPGIDIMHGELKNLMLIAEQDLKDALEQEERSEEAMDSMVRTECEGRLDTLVELYKLTYDLSFAIGVREENKKDGHL |
Ga0244775_100139458 | F047059 | GAGG | LTKSSAFIEYIKLHKLSLEQDLEDARNNIPLDEDEYFESDAFYMGAIDATEHLLSVAIGIMNDNERIY |
Ga0244775_100139459 | F038241 | GAGG | MLGYTKDDIDQMSNSIHDAKLFYIMKSDVEQVDKDPLVEGLLKANDFLQGLWAEGYFD |
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