Scaffold Ga0244775_10009640

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10009640
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9260
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F015600	Metagenome / Metatranscriptome	253	Y
F020910	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000964010	F020910	AGGAG	MWSRYTFVCDPDECDALVEFTARDDFGFPLGVVAMNCPCGRKLNYISYEQAYEPIITDVTNITPRTVVKINTNPYN
Ga0244775_1000964020	F000684	AGGA	MTLSGYTYQIGDLFTTSKTGVTGRIYSFAPQSNTVTRVGLQLANGSKRFAMVKTSK
Ga0244775_100096408	F015600	N/A	MTLEPRLQKLIDMGESGTDILHGELKNLMLEAENEYIEIEKEEREGGYSDAMLSMDRTRAEGRMDALVEVYALTYQLAFAISDRIKNNG