Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10007963 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10007963 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10305
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (8.70%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

10305

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (8.70%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005090	Metagenome / Metatranscriptome	412	N
F007751	Metagenome / Metatranscriptome	345	Y
F020010	Metagenome	226	Y
F056617	Metagenome / Metatranscriptome	137	N
F097353	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000796313	F007751	N/A	MNKIEELKSVIGKDVSQNQSPTCRARLVSVGKSNCIFESVPSPYDKFPKPEFVGVKYKVPNWIAWNSFFY
Ga0244775_1000796317	F020010	N/A	MATSNFHNVNATNIFAVQLEDEWDYSDLVVNLESEFSKHSDYSDYGKSDPNELRSFPSKSLGSFSNSLTIEDNEVEIYITPVIRSGYYEGCNLDWHIRLYVNGYEDDAYADDARVSVIANDYIEFIEDIFEQYSQPLGVTARFSNGETIYHTIK
Ga0244775_100079632	F097353	N/A	MIKLKDILYKENKEMNEKFSVQGMRAREIVSTILTKTDFAAGDIDSQKKHRRMIDDLVNIINNFYKKYDIDKKITL
Ga0244775_100079638	F056617	N/A	MRKSLKRENLLKNSKGQYRYQFNWVSGGFNDIWAKNLTEFKSELKRQFGNSNLDVNYNTLHKATASGAKSWDTAGNMMCW
Ga0244775_100079639	F005090	GAG	MKTKMKFVWCGVNFELPAECLRTTDYWGKTLENPYISIGRKECPAIAKQFMKAKYPHLLVWGSSETFANGNSATVNVCNPDGSDLDIESKEWNEINSFVRQMCGGRYDGWSESYEYGEPGKSDNGTKLDFGTKYLHVENKAPHGSWPSAIKTLKGLIAGEYVFGVLSLEKAIEKAKTYGYSDSTISKAIACL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10007963

Overview

Ecosystem & Geography

Associated Families

Sequences