Basic Information | |
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Taxon OID | 3300024346 Open in IMG/M |
Scaffold ID | Ga0244775_10007651 Open in IMG/M |
Source Dataset Name | Whole water sample coassembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10540 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (70.37%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000919 | Metagenome / Metatranscriptome | 834 | Y |
F004255 | Metagenome / Metatranscriptome | 446 | Y |
F008943 | Metagenome / Metatranscriptome | 325 | Y |
F091921 | Metagenome / Metatranscriptome | 107 | Y |
F091953 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0244775_1000765112 | F091921 | GGAG | MIELRIVENELGMKPDIQYRFMLFSVDASGALCPPNPDMKWSEWRTAEWVKAEEIEND |
Ga0244775_1000765113 | F008943 | AGGAG | MKFDGFDWVFLTIPIFIIVAAAVLTYDAQQERALFQQTYNKNLECRQALKDQTVGRVNEICGDVPVIGDFVK |
Ga0244775_1000765116 | F000919 | GAGG | MRFRDIEFRWSNCNNKYELVKWHRDNGSEKEYCYVIAFFDKGKEGYDMRTIGTRFFEHKEAWVVGKYALEFLNAIFQIEQDEEELK |
Ga0244775_1000765122 | F091953 | GGAG | MVELLATTVISCSDAFRLVNRIGNVIGLSYQQKIDVIQVISQHVPTCPLKIVPDERPKSS |
Ga0244775_100076513 | F004255 | GAGG | MNEKSKIFYNVWCCAYQRRGLYRGTAREHREHETVRICLDMKDVKFYQFDTEKPRYV |
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