NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10007651

Scaffold Ga0244775_10007651


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10007651 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10540
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (70.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000919Metagenome / Metatranscriptome834Y
F004255Metagenome / Metatranscriptome446Y
F008943Metagenome / Metatranscriptome325Y
F091921Metagenome / Metatranscriptome107Y
F091953Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000765112F091921GGAGMIELRIVENELGMKPDIQYRFMLFSVDASGALCPPNPDMKWSEWRTAEWVKAEEIEND
Ga0244775_1000765113F008943AGGAGMKFDGFDWVFLTIPIFIIVAAAVLTYDAQQERALFQQTYNKNLECRQALKDQTVGRVNEICGDVPVIGDFVK
Ga0244775_1000765116F000919GAGGMRFRDIEFRWSNCNNKYELVKWHRDNGSEKEYCYVIAFFDKGKEGYDMRTIGTRFFEHKEAWVVGKYALEFLNAIFQIEQDEEELK
Ga0244775_1000765122F091953GGAGMVELLATTVISCSDAFRLVNRIGNVIGLSYQQKIDVIQVISQHVPTCPLKIVPDERPKSS
Ga0244775_100076513F004255GAGGMNEKSKIFYNVWCCAYQRRGLYRGTAREHREHETVRICLDMKDVKFYQFDTEKPRYV

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