Basic Information | |
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Taxon OID | 3300024346 Open in IMG/M |
Scaffold ID | Ga0244775_10005569 Open in IMG/M |
Source Dataset Name | Whole water sample coassembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12734 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006586 | Metagenome | 369 | Y |
F008185 | Metagenome / Metatranscriptome | 337 | Y |
F086679 | Metagenome / Metatranscriptome | 110 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0244775_100055692 | F006586 | N/A | MQIESDKDFTQLINQFSVWRKRFPMFAHDVQQIEKIIDRHIQQHSKIMVMHRQTHNRSYLEKAQNEIDAINQVLNTVEKLELMAMLSRG |
Ga0244775_100055693 | F086679 | AGGAG | MGRALKKDVNGVDVINTPAAAATGITCEFYDGATNRTDGILIKQRGSTTYVVARIGTPGTLFTNTLVTGTPAAAGEMRIRGSTTGNLDTGLVSIAKLTKRVATDFSGNRYTWFLENDSSADYIVLTAI |
Ga0244775_100055699 | F008185 | AGGA | MPTLFRHAVNTEIGTTPVDVLQVDAGVRVTVIGFNLANVSDYDTVVVNIFVIDENSTQAHYVRGLTIAPNSTAKIITQGEKLILPETAGIRIVCDTDDSIDSVISYVEIS |
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