Scaffold Ga0244775_10005175

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10005175
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13298
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (27.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017994	Metagenome	237	Y
F037817	Metagenome	167	Y
F080032	Metagenome	115	Y
F081876	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000517511	F037817	N/A	MKMFSTVLIPEAKMGMEYVVTAEINKVNPEMDSRPGPYYFIQEVKKGTVKKIKKANFKQGKFYNFKDVIFT
Ga0244775_1000517517	F080032	N/A	MVEKKEKKVKLKYDFPTQLCCEVYVPNLEDWFRVTCNEFRSWCGQRRILHLLSTVKQNVPGGEYRMYDGPTYLYDSNKKINPNRYTQNKVAFLHGKDPRESKQRRHNAY
Ga0244775_1000517524	F017994	N/A	MEINEFIMHKNRWLNGWNQHMKLGDINFKTYMRMKGMTEEEFIVLEAKAAK
Ga0244775_1000517535	F081876	N/A	MLKFKKSDVFSFSEYGRTYVVKTLAHKLLETRAAQRTFDKNECIKHPSKGEMVLIPTNVKFEIVK