Basic Information | |
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Taxon OID | 3300024346 Open in IMG/M |
Scaffold ID | Ga0244775_10004097 Open in IMG/M |
Source Dataset Name | Whole water sample coassembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15283 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (29.27%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F009073 | Metagenome / Metatranscriptome | 323 | Y |
F017827 | Metagenome / Metatranscriptome | 238 | Y |
F021984 | Metagenome / Metatranscriptome | 216 | Y |
F035310 | Metagenome / Metatranscriptome | 172 | Y |
F067745 | Metagenome / Metatranscriptome | 125 | Y |
F103240 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0244775_1000409723 | F067745 | N/A | MSIYITPDNGSLTMQGSGKVQIKTSIKIYGTGTELPVTIEADFNNIPHNLHYLYYQSLVSNYNTNIVAHKNLSKVEDEPKTIKEKKSEWRLNRIVELISNVIKK |
Ga0244775_1000409732 | F017827 | N/A | MSYTSMNYERFGLYKNIPATKQPVKKAGLPTITFTDMFGRNFFFPYRTKKQRSEISDILRLLKAENNLLNRILSDYSVKMGKYVNESKLRAELKQAFGFSKSNIDSILTIH |
Ga0244775_1000409733 | F009073 | N/A | MKNYQIILTSFLSFFVAVTILDGTAAKYVHFAGPMNELGCAVIALTMGCLSFFAIDWKSFVNFLNK |
Ga0244775_1000409736 | F021984 | N/A | MSYTIPRGYTITPKVKYLRTKEGKKRTNLVELTNKRRGIAKLFGNEEYAIKYIQSLEVEKVTKNALAGKGAPSIGKGAILAAGRDIEAGKELNGVYDDMTNEEAKQLDNPFFQPLKLI |
Ga0244775_100040974 | F035310 | N/A | MRKLDLVNVGDELYEVIRRIPYQKFNKSLEGDAAKDLREWIGCEKILKSNQTNEYLFVNLIEEAKLCDE |
Ga0244775_1000409740 | F103240 | N/A | MKYTLVSKIPTRKEVLRIGRQAERWCRDNMGLNSRKKFDPTITYYQSVPADVCMGEYRYWDNEIIVYYNNTPNVKAFIQTIIHEWQHQLQPMTKYEGMDERHGYHNNPMEIEAVEAEQMYYKRLWKAIKPKINK |
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