Scaffold Ga0244775_10004097

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10004097
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15283
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (29.27%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009073	Metagenome / Metatranscriptome	323	Y
F017827	Metagenome / Metatranscriptome	238	Y
F021984	Metagenome / Metatranscriptome	216	Y
F035310	Metagenome / Metatranscriptome	172	Y
F067745	Metagenome / Metatranscriptome	125	Y
F103240	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000409723	F067745	N/A	MSIYITPDNGSLTMQGSGKVQIKTSIKIYGTGTELPVTIEADFNNIPHNLHYLYYQSLVSNYNTNIVAHKNLSKVEDEPKTIKEKKSEWRLNRIVELISNVIKK
Ga0244775_1000409732	F017827	N/A	MSYTSMNYERFGLYKNIPATKQPVKKAGLPTITFTDMFGRNFFFPYRTKKQRSEISDILRLLKAENNLLNRILSDYSVKMGKYVNESKLRAELKQAFGFSKSNIDSILTIH
Ga0244775_1000409733	F009073	N/A	MKNYQIILTSFLSFFVAVTILDGTAAKYVHFAGPMNELGCAVIALTMGCLSFFAIDWKSFVNFLNK
Ga0244775_1000409736	F021984	N/A	MSYTIPRGYTITPKVKYLRTKEGKKRTNLVELTNKRRGIAKLFGNEEYAIKYIQSLEVEKVTKNALAGKGAPSIGKGAILAAGRDIEAGKELNGVYDDMTNEEAKQLDNPFFQPLKLI
Ga0244775_100040974	F035310	N/A	MRKLDLVNVGDELYEVIRRIPYQKFNKSLEGDAAKDLREWIGCEKILKSNQTNEYLFVNLIEEAKLCDE
Ga0244775_1000409740	F103240	N/A	MKYTLVSKIPTRKEVLRIGRQAERWCRDNMGLNSRKKFDPTITYYQSVPADVCMGEYRYWDNEIIVYYNNTPNVKAFIQTIIHEWQHQLQPMTKYEGMDERHGYHNNPMEIEAVEAEQMYYKRLWKAIKPKINK