NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10003435

Scaffold Ga0244775_10003435


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10003435 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16829
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004206Metagenome / Metatranscriptome448Y
F010533Metagenome / Metatranscriptome302Y
F018915Metagenome / Metatranscriptome232Y
F027822Metagenome193N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000343510F004206AGGAGMIPQITDYLLHKLPDSFKGWTREAVEDYVMFHAQQGTLKIATQDEQVVAVLVGWRQVGPEPKAWTWQASDPNGDHWYWHQFAADCAVFAMAVAAKFFHDRPESAILPAIGHRNGKLVTYKKGSMPIYKMAYKKHGNIS
Ga0244775_1000343514F027822N/AMPAEIKDLGSIYAEATAGNESARQWIAAWHFYCHAIDDLVDGDAVLNTESMLDLLIQANSLYSMPFYIENWFRLQPVIAQITSTYADSVAWEKADEEWKRQTSDVLRLCGNDMILQVAWIIGGYKHMRAISLKLREFAYHSQHA
Ga0244775_100034355F018915AGAAGVNWIYQILKALLDWIRETPPTDVQHGNAPKALKNDLADRIADLPGLPGDEGGPGPFR
Ga0244775_100034357F010533N/AMRTVTYDYVLQRACELTGRVFSTLTTEESNFFRTFISMSLRSAWECFDWPEQTVYQQEFFAPNYSDAITYSQGTVVYYPVEQKYYQYVGSTNSGNAPTTNGPNGTLNSQYWGLAQASYSGNASWSSTTTYTVGTIVLYPVTQEYYQLYGTASAGTVPTNTAYWGILNKFLRNISQTTNPDGTTRAVPIGETFSVWPIDPRVTWRQQEAPYTFTDDGILITAELPYVWIEFRKTPPLLSSAAEATAYAFPYRFCEICSLKAAGQMLRVDGKIDLGNQFLELGEAELTKEIDKVALQEKYVRQIIVPSR

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