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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024346 Open in IMG/M |
| Scaffold ID | Ga0244775_10003435 Open in IMG/M |
| Source Dataset Name | Whole water sample coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16829 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (25.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Columbia River Estuary | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004206 | Metagenome / Metatranscriptome | 448 | Y |
| F010533 | Metagenome / Metatranscriptome | 302 | Y |
| F018915 | Metagenome / Metatranscriptome | 232 | Y |
| F027822 | Metagenome | 193 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244775_1000343510 | F004206 | AGGAG | MIPQITDYLLHKLPDSFKGWTREAVEDYVMFHAQQGTLKIATQDEQVVAVLVGWRQVGPEPKAWTWQASDPNGDHWYWHQFAADCAVFAMAVAAKFFHDRPESAILPAIGHRNGKLVTYKKGSMPIYKMAYKKHGNIS |
| Ga0244775_1000343514 | F027822 | N/A | MPAEIKDLGSIYAEATAGNESARQWIAAWHFYCHAIDDLVDGDAVLNTESMLDLLIQANSLYSMPFYIENWFRLQPVIAQITSTYADSVAWEKADEEWKRQTSDVLRLCGNDMILQVAWIIGGYKHMRAISLKLREFAYHSQHA |
| Ga0244775_100034355 | F018915 | AGAAG | VNWIYQILKALLDWIRETPPTDVQHGNAPKALKNDLADRIADLPGLPGDEGGPGPFR |
| Ga0244775_100034357 | F010533 | N/A | MRTVTYDYVLQRACELTGRVFSTLTTEESNFFRTFISMSLRSAWECFDWPEQTVYQQEFFAPNYSDAITYSQGTVVYYPVEQKYYQYVGSTNSGNAPTTNGPNGTLNSQYWGLAQASYSGNASWSSTTTYTVGTIVLYPVTQEYYQLYGTASAGTVPTNTAYWGILNKFLRNISQTTNPDGTTRAVPIGETFSVWPIDPRVTWRQQEAPYTFTDDGILITAELPYVWIEFRKTPPLLSSAAEATAYAFPYRFCEICSLKAAGQMLRVDGKIDLGNQFLELGEAELTKEIDKVALQEKYVRQIIVPSR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |