NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10003382

Scaffold Ga0244775_10003382


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10003382 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16973
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (41.03%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000919Metagenome / Metatranscriptome834Y
F032252Metagenome / Metatranscriptome180Y
F048267Metagenome / Metatranscriptome148Y
F067687Metagenome / Metatranscriptome125N
F074911Metagenome / Metatranscriptome119N
F077003Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000338210F032252N/AMKLYRYKKDGHLYTLYEQLRPFYNLVAVPYFPNQGILAKSKRSISMDDFVVVAER
Ga0244775_1000338211F074911GGAGGMILDEEVIKLVEEHFEEDWDENDGWEYSGNFDAFVKFAQEIFQMGYNEGMYDMSYFDG
Ga0244775_1000338212F067687AGGAMTDLSHKAQAIIDAADKVFSNGGRIRDGFASALRVLADNVAPDDYRCFYGDKEYDAGMEGRNDEIREAILSIATELEAL
Ga0244775_1000338214F000919AGTAGGMRFRNVEFRWSKFNNKYELVKWYPQTHGETCCVVAFFDKDKEGYDMRTIGNRFFEDKDAFVVGKYAIEFLNAIFQIEQEEEELK
Ga0244775_1000338230F077003AGGAGMVALLLTTTIISCTDALKIINRIVNVTGLTPLQKTEIIQEVRKTIPFCPVVIKKDTK
Ga0244775_100033829F048267N/AMTDEEWETALKSMNEYAKKWVGEEIDKIKYNIIKDIINGELEAL
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