Basic Information | |
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Taxon OID | 3300024346 Open in IMG/M |
Scaffold ID | Ga0244775_10000777 Open in IMG/M |
Source Dataset Name | Whole water sample coassembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 38758 |
Total Scaffold Genes | 58 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (82.76%) |
Novel Protein Genes | 11 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (54.55%) |
Associated Families | 11 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001396 | Metagenome / Metatranscriptome | 705 | Y |
F004761 | Metagenome / Metatranscriptome | 424 | Y |
F013753 | Metagenome / Metatranscriptome | 268 | Y |
F026484 | Metagenome / Metatranscriptome | 197 | Y |
F032258 | Metagenome / Metatranscriptome | 180 | Y |
F036236 | Metagenome / Metatranscriptome | 170 | N |
F048262 | Metagenome | 148 | N |
F048959 | Metagenome / Metatranscriptome | 147 | N |
F058086 | Metagenome | 135 | N |
F066605 | Metagenome | 126 | N |
F069861 | Metagenome | 123 | N |
Protein ID | Family | RBS | Sequence |
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Ga0244775_100007771 | F004761 | N/A | TIVDQFAREGFQRIYALERRWPYLQETYTFNTVVNQREYTISTIGDIREIISVLDTSSSGARLTLIPYDNAEEIWLGNTDVPSRPYFYSFWDKKLQLWAKPDAVYPMTVRAFRNPVYTWLSNPDETIDLDEWFHALLPYFVLGRVYQRQEDAQLSQMYLNSFEQGVGLARRDLMKASSAQPVVMSGGRQYPTMRRWLQTLGATIGQ |
Ga0244775_1000077713 | F048262 | GAGG | MMAGALEPIAESIQELQPLREAVADCIEKLSEQDQFIVNALNSEMISLQKLGERMGVSKPHAWRLRNAAYERLALHLRSHPYIQERFNLDENESGNSGI |
Ga0244775_1000077714 | F058086 | N/A | VKESRWDFPAERRYNFSDDLKFGKKGEELTRDFLQSIADGSFEVKTDRYRNGRMVVETEQNPRGNGWKPSGLEVTEAKWWVYIYCLDGAMLAVSVERLKRYIATLPKSRMKTFAWNSANPAKGFLLLPEEVMDMMINPEYDSEE |
Ga0244775_1000077721 | F048959 | N/A | VRKQEPTIEVSLTLSELRTVIKSLAIGVDQLAKKVMRHAMDERVESVHTELTELLSAKHEMETVMSLALQGDST |
Ga0244775_1000077739 | F013753 | N/A | MKHNEELTLTQQQQVYVEWLCTAPSERLPATKKAMALELGVDITTLRRWEKKEVFRNVWKDTVDEVQGSPERTQRLLDTLYSKALDGDTKSAQLYLQATNRMAPPTVTVQTNKKAAELSDAELDSLIAAVAEREKAQRTHLKAL |
Ga0244775_1000077740 | F026484 | GAG | MATTNDAMFTALSGSYPSAGQTLGDLLYAFWSEKGLQYRGTLERDWYISEGAVGTTLGDLANDYFSNLYDVVIFNYSEPDEWLELQVFDRFDTVEQQVFFI |
Ga0244775_1000077746 | F036236 | AGGAG | MNKAKDIAGRIVALFLTNALGVVTGAAIIAPDLEVWKSALIAGAVSIFKVAEQLAKASIDGVLTKDEIDAAFGASPKKIAAKKVAAKKA |
Ga0244775_1000077748 | F066605 | GAG | MSIVMKEFRCLECLNVFMDSELPRRGSICFKCHIKSVRLGFTYGQEDFHGPTVKERADEQVRVAKEAGITAEPVGSRWV |
Ga0244775_1000077749 | F001396 | GAG | MVWVPIIVAIISGPLVVVLQKLRKENTNQHAEGQILLRMVGTKVDKIASKLDNHIGWHEGKKED |
Ga0244775_1000077757 | F032258 | N/A | MKNAVPAHSYYGQPVFGIRLAPTAGAKIAAPSAPYVGRNRCIANEDSCEGPKARGTDYCIGHLRSQGRAK |
Ga0244775_100007779 | F069861 | AGGAG | MTKKRVYTGNKDGAAKGLRPGMKVFINEVIKLSNGALWNNGDWGVRPMRGKESLSVHATGRAVDLSYRHMPPSKGIKNGRIEALRVLKIVEANAEALGVEAIFDYIVKPHGRAWMCDRNAWLNYKKETIHGGGSGDWLHFEISPEMADDPAKMKEAFANLVIPAESPKSPEEQL |
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