NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0244775_10000777

Scaffold Ga0244775_10000777


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10000777 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38758
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (82.76%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Associated Families11

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001396Metagenome / Metatranscriptome705Y
F004761Metagenome / Metatranscriptome424Y
F013753Metagenome / Metatranscriptome268Y
F026484Metagenome / Metatranscriptome197Y
F032258Metagenome / Metatranscriptome180Y
F036236Metagenome / Metatranscriptome170N
F048262Metagenome148N
F048959Metagenome / Metatranscriptome147N
F058086Metagenome135N
F066605Metagenome126N
F069861Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100007771F004761N/ATIVDQFAREGFQRIYALERRWPYLQETYTFNTVVNQREYTISTIGDIREIISVLDTSSSGARLTLIPYDNAEEIWLGNTDVPSRPYFYSFWDKKLQLWAKPDAVYPMTVRAFRNPVYTWLSNPDETIDLDEWFHALLPYFVLGRVYQRQEDAQLSQMYLNSFEQGVGLARRDLMKASSAQPVVMSGGRQYPTMRRWLQTLGATIGQ
Ga0244775_1000077713F048262GAGGMMAGALEPIAESIQELQPLREAVADCIEKLSEQDQFIVNALNSEMISLQKLGERMGVSKPHAWRLRNAAYERLALHLRSHPYIQERFNLDENESGNSGI
Ga0244775_1000077714F058086N/AVKESRWDFPAERRYNFSDDLKFGKKGEELTRDFLQSIADGSFEVKTDRYRNGRMVVETEQNPRGNGWKPSGLEVTEAKWWVYIYCLDGAMLAVSVERLKRYIATLPKSRMKTFAWNSANPAKGFLLLPEEVMDMMINPEYDSEE
Ga0244775_1000077721F048959N/AVRKQEPTIEVSLTLSELRTVIKSLAIGVDQLAKKVMRHAMDERVESVHTELTELLSAKHEMETVMSLALQGDST
Ga0244775_1000077739F013753N/AMKHNEELTLTQQQQVYVEWLCTAPSERLPATKKAMALELGVDITTLRRWEKKEVFRNVWKDTVDEVQGSPERTQRLLDTLYSKALDGDTKSAQLYLQATNRMAPPTVTVQTNKKAAELSDAELDSLIAAVAEREKAQRTHLKAL
Ga0244775_1000077740F026484GAGMATTNDAMFTALSGSYPSAGQTLGDLLYAFWSEKGLQYRGTLERDWYISEGAVGTTLGDLANDYFSNLYDVVIFNYSEPDEWLELQVFDRFDTVEQQVFFI
Ga0244775_1000077746F036236AGGAGMNKAKDIAGRIVALFLTNALGVVTGAAIIAPDLEVWKSALIAGAVSIFKVAEQLAKASIDGVLTKDEIDAAFGASPKKIAAKKVAAKKA
Ga0244775_1000077748F066605GAGMSIVMKEFRCLECLNVFMDSELPRRGSICFKCHIKSVRLGFTYGQEDFHGPTVKERADEQVRVAKEAGITAEPVGSRWV
Ga0244775_1000077749F001396GAGMVWVPIIVAIISGPLVVVLQKLRKENTNQHAEGQILLRMVGTKVDKIASKLDNHIGWHEGKKED
Ga0244775_1000077757F032258N/AMKNAVPAHSYYGQPVFGIRLAPTAGAKIAAPSAPYVGRNRCIANEDSCEGPKARGTDYCIGHLRSQGRAK
Ga0244775_100007779F069861AGGAGMTKKRVYTGNKDGAAKGLRPGMKVFINEVIKLSNGALWNNGDWGVRPMRGKESLSVHATGRAVDLSYRHMPPSKGIKNGRIEALRVLKIVEANAEALGVEAIFDYIVKPHGRAWMCDRNAWLNYKKETIHGGGSGDWLHFEISPEMADDPAKMKEAFANLVIPAESPKSPEEQL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.