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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024346 Open in IMG/M |
| Scaffold ID | Ga0244775_10000236 Open in IMG/M |
| Source Dataset Name | Whole water sample coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 73018 |
| Total Scaffold Genes | 54 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 42 (77.78%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Columbia River Estuary | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014734 | Metagenome / Metatranscriptome | 260 | Y |
| F032284 | Metagenome / Metatranscriptome | 180 | Y |
| F048997 | Metagenome / Metatranscriptome | 147 | N |
| F059005 | Metagenome / Metatranscriptome | 134 | N |
| F095476 | Metagenome / Metatranscriptome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244775_1000023621 | F014734 | AGGA | MIEENAKGAFIEKMLFALLPLIIAGVGYLLSAVGTLAHQVTILESKMSLVVTSDNKQASNTSSELARERLRQDLTAEIQKNRDSIQDNRQAISIHEEKLRQLQKQTGK |
| Ga0244775_100002364 | F095476 | GGAGG | MKLQEIVFPVFRLGEKQPETDGNIVYYKSEYSDKDTAEHTTNYRFVDDKSIDKPTLGLRRLALQGKATLFPISSAVYFLVDIIKLAKSTTWFIDSHGQVFQHKKTTRAKLTTKKITKVLPADGIGCVLELQGIAHRFKTMIQPQSYHQYGGVLYMDNSYLFYGYYEYPQKDTWRLV |
| Ga0244775_1000023642 | F059005 | AGGAG | MVEINDHSFIQTISLVALAVVAFSVGIQKLLKDWKSTNAETSVITLMHTELERMSEQNGLLATELNRLQQEMILLNAQLAQLCIENQQLQTEVVALTQEVNKFRVSATISAAKKLG |
| Ga0244775_1000023648 | F032284 | GAG | MTKDAYFEMCEALGSEPVESEIPVEFDDFPFEVQQAFNAYRMLRDEWDFMNGNYLGKSLIGIKDVLEATEVEASEQKFIVMLIRVIDNIRSDEINNKKKTQEPAN |
| Ga0244775_100002366 | F048997 | N/A | MTFFFNLELLESTTQCDSVKLVEILRLHFIRKSIPKNQYSKIKPIFNLNGNSFLINPASLFTDTSTDIVHKAQYIRLAGRRNYAIYKHYDYTYLDLSYYSDIDLNAIKSNTLLKITENKIHFKYEEK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |