NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0244775_10000169

Scaffold Ga0244775_10000169


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10000169 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)85296
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (52.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011477Metagenome / Metatranscriptome290Y
F032484Metagenome / Metatranscriptome180Y
F048106Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000016946F032484N/AMKKPDNIDKLLIIDHANKVITQKRELNPPTFNGRFRDKVREKYPDYELK
Ga0244775_1000016973F048106AGGAMKDLQVFINNILDIFITKKSLPKDVINDFIAYFYFTLDNEIKSNKSELLKNKYIKIRKNGLIYIIANKEAILANIRKKKLSK
Ga0244775_1000016976F011477GAGGMSVAVIWAWVLANEAAVATILLIVSELLGAIPQVKSNGLASFVILQVRKVLENKGAKDPT

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.