Scaffold Ga0209992_10119251

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10119251
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1168
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011853	Metagenome	286	Y
F021104	Metagenome	220	N
F077385	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_101192512	F077385	N/A	MGGRIHPGVLVVKHVWQWFWDHDWLNNKVKNWYFGPRLNWMKLVKEKKNDKSKIRKIRKSSK
Ga0209992_101192513	F011853	AGGAG	MTPETIKKKKEDLIKKHNTLKDKIEEGKSAIRNMEAQLNGFVGAVQLCDDLLNNPEEPKSGK
Ga0209992_101192515	F021104	N/A	QWKNMQKNYPEDFEDACEVDDKIRHGLKNTTSELFLHKSAKPLRSINFLEPKAQQNLFGETFDEEFADECEGLCGV