Scaffold Ga0209992_10028115

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10028115
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2904
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004071	Metagenome / Metatranscriptome	454	Y
F056050	Metagenome	138	Y
F087046	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_100281153	F004071	N/A	VDILITFLFIGGGFAEIPARLQPYEFCTDKSQEYITYVENPDYKEGNNQVWIHATYNNKKIFATYCKTLDRKRMVSYYDPEYEQSKQ
Ga0209992_100281155	F056050	AGGAG	MKKKKVVMMEDFDNWLSECPVPYEQTCNGLNTTEYYSFNLIDCEMKSDKYNEWYEPTEED
Ga0209992_100281157	F087046	AGGAG	MSNEYEFKVHNFYNYTLEELPKLKEEFEASVSSFESMYDQAVNFKEACADLDKLSKDEWYKKYVSEDGDHWVEDDYIYTLAEEHYKEKI