NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10023508

Scaffold Ga0209992_10023508


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10023508 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3270
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003531Metagenome481Y
F005656Metagenome394Y
F008252Metagenome336Y
F015219Metagenome256Y
F020919Metagenome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0209992_100235081F008252AGGAMSKYIGQWFFYDDDISIYWNRGNTFNVYQDQKEVNRFTVMETMTPKRAELVADEWLAEQLEEEKLRHADIN
Ga0209992_100235082F020919AGGAGMPDLRIQTALDNGDLTKDSGRSFKALTLFDALKNTTVIKKYNQQFEKEFGRPSVFASPTKTQRS
Ga0209992_100235083F015219N/AMTVKPESNFGRQIIKNLPFAQWTRIENRHGGGIPDLYGIYGGQAIWLELKCIKQNSINISPLQISWNYNNFRHGGKNYYIVQDTRSKVLKLYDGDKGRELKEKGYLYGGQSLILPPPTNWNDLQSFLFP
Ga0209992_100235087F005656GAGGMKLRTLLEIQKTVEERATPNDVLGFDSYHYSQSKDVKINILDLHLTHAIRILNNYLEDNIYPKYSDRQEINDNLRGIRDKVDDISDVVNK
Ga0209992_100235089F003531N/AKMKRKIWTSEEIERARELAKTNSYSTVGKILHRSKNSVIGQFYREKVLKGYTPPPDSKYTHKKEKNIFLDN
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