NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10004721

Scaffold Ga0209992_10004721


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10004721 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10481
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028039Metagenome / Metatranscriptome193Y
F041493Metagenome / Metatranscriptome160Y
F042628Metagenome158Y
F086164Metagenome / Metatranscriptome111N
F104992Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209992_100047214F041493AGGAGMTTQQQDYYTKMIDSNDDHLYTTIYDSVSGDPFRVKTERVGHYLSKIKKESRLEGKQLVFTGEWIPSFVKTKQEIIGSPISSEPKQIASVGQSKAGKRRRGRRGRKK
Ga0209992_100047215F028039AGGAGMTTEIKTERWETIVKEIKFENRWNITLEKHLKDNNLTELPEPEWSDDPTMAYIYLPAKSLKGDTVRMDKTKARMFPESIVGYLEKGGLMKLPAKVEASQSSQIKEQLPKMETEKPKPQKIKLPKIGE
Ga0209992_100047216F104992AGGAGMTVGTRQYESVNSTTTTMSGNADLTLTAASDKLQIVDPGGGARNLDLIFVDASETGVTTGFAEVYVQNEADADEALTIRDGNNSDNAIGVLDQNAGGWFRFVGGQWVSSTSGLN
Ga0209992_100047218F086164AGGAGMAFGHQKLTVDATVRSLTVPNDVNFAQIKVETAAIRYRIDGTDPATAEGVLVSAGDAFTVYGSDTLNTIKMVEATSTDAVINVSYGTANTGIHGVIINTAA
Ga0209992_100047219F042628AGTAGGMGKYTKANKNNIFKEEPEISVSEHTVTKKGRKMKMVIPEGKIGYGDVESHAQMAGDLATKHSDDTKAGEKVYEEVRKHRSENTGSTVEEHELKMAYAKMQGRMPVIQSFNITDPVTGQVIAQEFLFMKTDKNGLTRPLKIRVDVQSGKTTEVPL
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