Basic Information | |
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Taxon OID | 3300024344 Open in IMG/M |
Scaffold ID | Ga0209992_10003429 Open in IMG/M |
Source Dataset Name | Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13309 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (68.18%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
Source Dataset Sampling Location | ||||||||
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Location Name | Kolumbo volcano, Aegean Sea | |||||||
Coordinates | Lat. (o) | 36.5264 | Long. (o) | 25.4868 | Alt. (m) | Depth (m) | 470 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F010829 | Metagenome / Metatranscriptome | 298 | Y |
F041432 | Metagenome / Metatranscriptome | 160 | N |
F051060 | Metagenome / Metatranscriptome | 144 | Y |
F065101 | Metagenome / Metatranscriptome | 128 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209992_1000342910 | F065101 | AGG | MNQVGTIKRIDQYERVYVPKQILEALGLEKSTEESHGGHCVWVETDMGYMLKKVNVDIEA |
Ga0209992_100034293 | F010829 | GAG | MGNLADHRRLRKEQGLHEDDPGTGEYTKDELNYIPFLGNNPSEEKPALYTGRFNVSKSIIELEAKRSGGKLYLTCMADEKVHRAIFECVDRFVTAIFDGSAREIKEAEPEDSQIMKLRAELSQVTKEKKEMKDTLETLRKALHG |
Ga0209992_100034295 | F041432 | GGAG | MAEQATELKLVGGLFRNKSKKGDVYYSGKGEDGTQYVLFRNAYWKEGEENKPYFRLHQKVPKGSSNTMMD |
Ga0209992_100034296 | F051060 | N/A | MDKLEHGTLLGKCALDGQPIYQGSGFRSIHSTVTNGKWISGDALLKLYQRCFEAFLAHNEDAEKEKQILLGKLEKYGWQTDPETGKLTKVLNRSE |
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