Scaffold Ga0209992_10003093

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10003093
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14401
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004849	Metagenome	421	Y
F008153	Metagenome	338	Y
F048246	Metagenome	148	Y
F098212	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_1000309313	F004849	GAGG	MTKSEFKRKVGMGFFSCEWVNNAGSISKVKRGILGGFAWRHTNNPVPTNVKEHNDYVLAYRVGNGLLPEHRRWANINPLTIKKINGVEV
Ga0209992_1000309314	F008153	GGAG	MSKDLITMNNVNIQPLMESLVELVKDKKATGELDDLINAKLPEKSSADWKLICGVLCNSVVEWVAVNKDEEVKSTDLLQHLQSDIGYILKRLGLS
Ga0209992_1000309315	F048246	GGAG	MVLPEDSSNPIVEVLKEIADSLDKNTEILNRICSHYDSVVPVMKKNQEMVALSNEDNRSALDKMYETVFNN
Ga0209992_100030938	F098212	N/A	MQDRGQMDEQIKIINKAMQSLEKTARGEIKKDEDKLLVASALMAVTRNLYVETIGADDTAHVFASIADSFFLTEDMIKQYKPTIH