Scaffold Ga0209992_10001515

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10001515
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24147
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (44.44%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F001625	Metagenome / Metatranscriptome	661	Y
F021393	Metagenome / Metatranscriptome	219	N
F031648	Metagenome	182	Y
F049929	Metagenome / Metatranscriptome	146	Y
F062151	Metagenome / Metatranscriptome	131	Y
F064801	Metagenome / Metatranscriptome	128	Y
F087318	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_1000151512	F031648	N/A	MVEYNHNVVSFNADTTIKGAHGVIVSVYVTKSGSSGAKCIFKNGTSGSGTAEFTIFSEEQGTYVGINRRFEDGIFADITGNAEYTVVFK
Ga0209992_1000151513	F001625	N/A	MAVTISTSDWTAANVRKTLSWQAALTSKLRIYKVKVTAGGSDAYATNGVAADLTIEGRISTLVAVIPEFTDSLYKVEYDKANSKIKLYSVGGSAGAVFAEVANSTSIANKVFEFLVIGY
Ga0209992_1000151515	F021393	N/A	MVNEDNSKEQVEDVAKATSDNESVEKSFQESVKSGFDTLTEVVQSIAETQKATLDSLGDLDTRLKAMETPTDLPLSPKGTAASDDIGAKVTVPDTYQSNSVQAGLDDDRSGDKKPSSDKGGLKMQQKSDDTELVEKSQHTFTTETPRPNAALETVDKSFKDESMILKDARAGGAEGLSQVARNILAGKYYTPSEDEVGAY
Ga0209992_1000151520	F087318	N/A	MCAKPLLIKMTDYITMGISVHVYDSLDEYIKRTGHMVSDKIDVNETSLSLMDIWITNDEKLRVVLDCKRFFDRPDVSRSISCFQTNNIDKYNTGDEKLVEYDDVTFDPKTENLQFFKKRFRKAPIFFKVGRFWGDKPNKTTKIDWAYKFFNVKANRIDFVLLSNDTVVKKPISKPIP
Ga0209992_1000151521	F001235	N/A	LATKLNVDTGGEYVGKKLWEKHQADEYTHVNHYKEAVCINCFKKDAAAATIVTICGDCAGKRGREPLLAKISDKPYGLCYFCGEHKWHIEEINARFCHSCHRKIANVTKEYNKKGGLYSNPFWSSMRKKHGKDWMHIMNSNLGNRR
Ga0209992_1000151523	F064801	N/A	MGIRDTLSAFASKFTNKSYTETTTRPSIATPYMSTDTGAKLPIFPFPLIMIYELADNIDALRIPIETLNREMFKNGFEVIEKWKFKCDNCGKEFQYQPLKGDHRDEQPFEQNSDNESNTIPRSDSKKAIAHELNQTTEMECDTCGSNKLRRPKPENRKKLEDMLESPVNGNDQTLEDLARQLERDLEIADNAYCLVLKNYKIDDRTGKIDHNASEVKELLRIDPPQVALIADSDGRIGYDDKRNKIFVCPRFEHRDKRLTVPKCDRCGAEALKAVLEVNSVYSIGIPQPKRVVYGEGEVIWKAGKYKPSLLYGYSPIYSIWSKAMSLSHMDEYIRKYFDKMRPPRGMLVIASRNYETFRKSWDVLEQKATEDPYMIHPLLVESDKGGKNMAQWIDFTGSLKELEFTEIRREIRMIIGAVFGVLPLYFGELPSGWSQEGLQVTITNRAIKWGQDILYQAFLRKFAHLLDVDDWQLRLKGGEENDKLRDLQIQGVEIQNMAAMQAMGFEVTKTHTGEFKVSKNPIINPTMMMLESKEEPNTSGSEGRGRGTAAPKEDQQEIDGKPKKQRPSDKGGVGQGSPSSGKGTSQSKKADIQAFLEPKKFPDGITPANFEIVKSTLQSAIDFDWTKKKAVDELRTKGNMTVRQARDIVKQELSDTKRWEDEDF
Ga0209992_100015157	F049929	N/A	MAIKSFEIDWGGTPETIEYEDDITYGELEAILQNSIDLGDVSKPKVDIPKYRFQILLKVLRKAPFAVNDAVALRNIKSRQANSIMKEVMKDYPLVKFLGDWVETFTGSLNPTEIDSLSTTSVQ
Ga0209992_100015159	F062151	N/A	MSSFIYDAATVVIDLLNDNWSAGQVPEITKAWKKRSVGFIDDRRDQIVITPKAEKIQYFGLYGDDHWHDITIDLDIRTYQDDERHNDIVKESIRILTAKIRGGSSYTDLRVISSYTRNQYMRNMFNHVLTVSIRKTNPS