Scaffold Ga0209992_10000539

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10000539
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49877
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012581	Metagenome	279	N
F013187	Metagenome	273	Y
F017840	Metagenome / Metatranscriptome	238	Y
F024676	Metagenome	205	Y
F095588	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_1000053915	F013187	AGGAG	MSKKKPTWVYIYGDECQDIWEHFGFPFPNPNDRMKLKFVKYETKENKDG
Ga0209992_1000053916	F012581	AGGAG	MAKYTLYAKKVYYYRKDINAQDRKSAEKRGADYEADDNPERLFEPSGTEFYITSIEESDD
Ga0209992_1000053922	F095588	GAG	MKYKIEMEIDFNKRPTKKDVLNKLFDMLRDNKVEYKLHKYNNNLWEQIKRSIKNDKHK
Ga0209992_1000053923	F024676	GGA	MYNKTNVKKQMFVIAMPYPKNKKLPDILEEEDGQVMYFKKEKDAITFLQNLYDERNIHIQALIDDNIKIMRVQ
Ga0209992_1000053976	F017840	AGGAG	MKDKKQTTLIVGANARTMNNSTGHDTSAKPTGQGYGAARKGPGVRGPIEAQVKEEPREYKTQGEG