Scaffold Ga0244777_10188104

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10188104
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1328
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020137	Metagenome / Metatranscriptome	225	N
F022877	Metagenome / Metatranscriptome	212	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_101881041	F022877	N/A	LMFAGDIVSVSAGAGQVWSFNDYLPNTRLNPVSSSAYTDGGANYESTVITKAYNLNEPIPDKIGYSVQFAFDNPYTTATTTAEVSLAKDMSDTFVTLDSALAITSSQKFLKAYNLISQGRWNTLQFKVTADAGRLSLQSTILSGFVDSVRPQQ
Ga0244777_101881042	F020137	N/A	MTAHPTNIEAAKLLREHWPTCSTWNDDQILNWIGIFSAKKLIGIVKNEEGKCVGVGAVRFLNSIEESEDLENNFPDGHIAWIEIAIGTEPHAVHTLWLAMMRLCSKNVTKLGGFRKGINRLYDFDRYSKLLMNKRISYGRII