Scaffold Ga0244777_10097264

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10097264
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1899
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y
F043399	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100972642	F043399	N/A	MFYDDFPIVIWTIVKKNNNYILLDSCGIEVFRRKENRKKEIYQYCENNGIDVQEEF
Ga0244777_100972645	F007310	N/A	MRTVLWNNTERWNNHHHYELLIEDITGFDLKKSLCEESVKYMAKRLKDTPYHRAFRNKYSIYQDEYKTLVEKFNNQADNNGRIMVE
Ga0244777_100972646	F006220	GGTGG	MKKFKKFVEELALASGTEMMRASQMRPTSFKDKSKYSRKTKHKNRQDKNSGDSF