Scaffold Ga0244777_10062680

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10062680
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2384
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F005454	Metagenome / Metatranscriptome	400	Y
F023593	Metagenome / Metatranscriptome	209	N
F036489	Metagenome / Metatranscriptome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100626802	F005454	N/A	MRIIKHYNSNFPERETYKCTIRYTTKFGTLDEVNQWRDDQLKNEDYYKSLEESNTKAAGEFYKTLNYKND
Ga0244777_100626803	F036489	N/A	MNKNFKNVVFTTMIGLCTFQIGVIFKQNQVNEVNEWRESIVESYILRTDNGTMLGYNINILDDERLFTYED
Ga0244777_100626807	F000352	N/A	MRNIKLTDSDCTFVHYVLRMYAQQTPGLDSEDKEEIREVAAKFK
Ga0244777_100626809	F023593	N/A	MSKMNEIDEIAQYQADVILETLKEQVEWSIADYDVNGDDFYNLRDYTVYQTVIKLLEQVDLVDVDNYKQNTIISG