Scaffold Ga0244777_10043993

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10043993
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2851
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059362	Metagenome / Metatranscriptome	134	Y
F080496	Metagenome / Metatranscriptome	115	N
F087020	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100439934	F080496	AGGAG	METWEKELDENMKSIKSSYESIMKTGYSIIGVMILWIGIEIGMLL
Ga0244777_100439935	F059362	AGGA	MIKTGDPFLVEDNIRLRRTADIEGNIGKIIRVGTMNDTDFDYDIGTLISINDVSLVIRSLNDGDIKAYDLNCTNSGLYKGTIEIG
Ga0244777_100439939	F087020	AGG	MPKYNIYNKHLMSYAEWVERYKGKQIDEVILEDHKVYLKQFKAWQIGNIERV