NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244777_10001141

Scaffold Ga0244777_10001141


Overview

Basic Information
Taxon OID3300024343 Open in IMG/M
Scaffold IDGa0244777_10001141 Open in IMG/M
Source Dataset NameCombined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19594
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (43.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010540Metagenome / Metatranscriptome302Y
F052599Metagenome / Metatranscriptome142Y
F102701Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0244777_100011411F010540AGGAMAKIRVIVNGVSYKTTTTAIKNRSSSDFTMQNDALFYVLECMGKHAGFGTTVRYYDYKMVQHKYDVQLTRL
Ga0244777_1000114110F052599N/AMKYYTIVFPGECGQHVQETWRTDQILQSYYTYWVTKMIQNNNYLDISEERCIDDWCVVHWAIETDECGNKV
Ga0244777_100011419F102701GGAMNEEDYDVVIDTLQKKIDALWKMTKSNMDNDMMNIMDDIRLKQIDELKKAIELWLWKERK

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